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advanced-genome-model

Experimental work on creating a next-generation genome model for the autoML and computational biologist community.

entropy-detecting-information-relays-in-deep-neural-networks

Code to generate the data and perform analysis for that publication, contains the code to compute information relay decomposition using a greedy algorithm

gwasmodel

Using data generated by MABE to perform a GWAS and a systematic KO analysis to compare both resutls

mabe

Modular Agent Based Evolution Framework

mabe_extras

Additional modules, utilities, and python functions for MABE.

mabe_testing

automated executable-level functional and consistency testing

mabe_vis

Experimental branches dealing with getting non-standard data out of MABE and also visualizing it. Testing ground for new data export features and possibly vis features.

nbackpaper

ncaa-d-21-01407r2

Neuroevolution gives rise to more focused information transfer compared to backpropagation in recurrent neural networks

robustness-of-sparsely-distributed-representations-to-adversarial-attacks-in-deep-neural-networks

Repository for the same named article in Entropy

td_egt

code repository for the thermodynamics of evolutionary game theroy