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cied

Cochlear Implant Electrode Detection

ilastik-napari

ilastik plugin for napari

imswitch

ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.

keyword_spotting

Keyword Spotting using Dynamic Time Warping (DTW) in Historical Manuscripts

litos

LITOS - an easy-to-use tool for optogenetic cell stimulation

mmcoreanddevices

Micro-Manager's device control layer, written in C++

napari

napari: a fast, interactive, multi-dimensional image viewer for python

napari-chatgpt

A napari plugin to process and analyse images with chatGPT!

napari-convpaint

Segment images by pixel classification based on pre-trained convolutional layer feature extraction

napari-micromanager

GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets

napari_pixel_classifier

An Ilastik-like interactive pixel classifier.

orientation-py

Notebook to extract fibre-like structures and color them by orientation using gabor filters.

pattern_recognition

Group project: Pattern recognition course SP2020

pipeline_mcf10a

Cell segmentation, tracking and ratio calculation pipeline on MCF10A

popgen

Projects in population genetics

pymmcore

Python bindings for MMCore, Micro-Manager's device control layer

pymmcore-plus

Extensions for pymmcore (micro-manager) providing improved python UX and pure python acquisition engine

scdino

Self-Supervised Vision Transformers for multiplexed imaging datasets

scribbles_creator

signature_verification