Name: Wilson Adams
Type: User
Company: Vanderbilt Biophotonics Center | Vanderbilt University
Bio: Nonlinear Microscopy | Image Analysis | Neuroscience |
Helping scientists and doctors use lasers and imaging to solve their problems
Location: Nashville, TN, USA
Blog: https://twitter.com/WilsonAdams_
Wilson Adams's Projects
A collection of custom look-up tables (false color maps) for FIJI/ImageJ. Also found in the NeurocytoLUTs update site.
This is a FIJI/ImageJ script used to normalize a timeseries image stack (for visualization purposes) to the stack average between a designated range of frames. Divergent LUTs are recommended for visualization (ICA, ICA2, ICA3, OrangeLowCyanHigh, PurpleLowGreenHigh, etc)
Two scripts to let you check the colorblind-friendliness of your figures/images.
ImageJ macro for automated flat-field correction for fluorescence microscopy images and stacks. Effectively a high-pass spatial filter that works better for abnormal backgrounds.
The update sites ImageJ knows about automatically
Sick of resizing all of your figures in matlab when you run your scripts?
Sick of resizing all of your figures in matlab when you run your scripts? Placefig() streamlines this hassle and saves you valuable to do what you do best, writing the stupid code.
The startup macro for the Vanderbilt Biophotonics Center FIJI update site. It provides a GUI of shortcuts to some useful but buried FIJI commands to speed up exploratory image analysis. Replace your 'StartupMacro.ijm' file in your FIJI macro's folder with the script in this repository and you should be good to go.
These tools load into the FIJI GUI on startup. Feel free to take and modify to your likings.