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able

Automated Brain Lines Extraction Based on Laplacian Skeletonization

ants

Advanced Normalization Tools (ANTs)

biigoptitrack

chimera

Chimera Algorithm, a novel optimizer able to generate and evolve the architecture of feedforward Convolutional Neural Networks based on the adaptation of the Artificial Bee Colony Algorithm to work within an Evolutionary Computation framework

compressed-sensing-diffusion-lung-mri

Compressed-sensing-diffusion-lung-MRI

conosurf

An open-source 3D scanning system based on a conoscopic holography device for acquiring surgical surfaces

efficient-art-split-bregman-reconstruction

MATLAB code for an iterative reconstruction method that alternates a computationally efficient linear solver (ART) with a fast denoising step based on the Split Bregman formulation

fmrat

hggm-covid-opentrons

imagej-perfusion-plugin

Dynamic magnetic resonance perfusion quantification plugin.

j.cmpb.2013.04.010

Source code for paper "Automatic TAC extraction from dynamic cardiac PET imaging using iterative correlation from a population template"

jclustering

jClustering is a dynamic image clustering framework for ImageJ. It provides a public API for implementing new clustering algorithms and several implementations.

limtools

ImageJ plugins and macros developed at the Medical Imaging Laboratory

motion-estimation-compressed-sensing-mri

nir

Code for Asier Thesis

phardiviewer

plus-lim

PLUS version from LIM

pluslim

pointsetprocessing

A set of classes (vtkPointSetOutlierRemoval, vtkPointSetNormalEstimation, vtkPointSetNormalOrientation, vtkPointSetCurvatureEstimation, vtkEuclideanMinimumSpanningTree, and vtkRiemannianGraphFilter) to enable several basic operations on point sets. These classes are implemented as VTK filters.

prior-motion-reconstruction-ct

Data, code and results for prior- and motion-based reconstruction (PRIMOR) method for respiratory gated CT

respiratory-gated-ct

respiratory-gatet-ct

split-bregman-st-total-variation-mri

Split Bregman spatiotemporal total variation for MRI

split-bregman-total-variation-jacobian-matrix

Constrained total variation image reconstruction problem solved using the Split Bregman formulation where the Jacobian is provided as a matrix

split_bregman_piccs_fmri

swim

Vertex-wise Sulcal Width Map Estimation

tls

Pedro & Blanca

tracerkinetic

This R package implements compartmental models and linear approximations needed to perform kinetic analysis on dynamic medical images. The provided functions use the tissue time-activity curves, the input function and the frame times as input, and return the kinetic parameters and the estimated errors.