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atacseq_variant_caller

cis_regulation_mechanism

conditional_random_field

covid-19

covid_19

gibbs_sampler

Run Gibbs sampler for analyzing multiple text corpora

informative_contacting_pairs

lda_mvn

Derive latent Dirichlet allocation with multivariate normal prior to cluster contacting chromosomal regions

pkubionet2023

predict_contacts

Predict contacting chromosomal pairs using multiple machine learning methods and compare the performances

predict_genetic_impact

Predict genetic impact using multiple machine learning models, and obtain the most informative features

prior_info_lr

Prioritize genetic variants that affect complex traits utilizing domain knowledge from biological features -1). Integrated prior information in l1 penalty to enforce differentiated levels of regularization in linear regression -2). Identified more variants being known to be associated with complex traits compared to existing methods

recommender_system

Provide movie recommendations by predicting user ratings, as well as clustering groups of movies according to known user ratings

regev

Replicate regev's glioblastoma scRNA-seq paper

text

tfs_gene_expression

cis-element structure of TFs

ts_eqtls

Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model