hengbingao Goto Github PK
Name: hengbingao
Type: User
Name: hengbingao
Type: User
Publication Page for Satpathy*, Granja* et al 2019
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
Analysis pipeline for ATAC-seq data
ATAC-seq and DNase-seq processing pipeline
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes
Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
Maybe a circos image generator in c++
circos pipeline
An integrated platform for modeling gene-regulatory dynamics and networks
CNEFinder: Finding Conserved Non-coding Elements in Genomes
Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
phast cons calculate
Python package to analyze DNA methylation data
A VGAE-based model to infer transcription factor regulatory network
Extensive de-novo TE Annotator
Optimize weighted gene co-expression network analysis (WGCNA, a R package): fast calculate unsigned Topological Overlap Matrix from unsigned or signed Adjacency Matrix
csf fork of fastqc for usage on selected reads of unaligned bam file
find conserved non-coding sequences (CNS)
Create timecourse "fish plots" that show changes in the clonal architecture of tumors
methods for functional summary-based imputation
GENIE3 (GEne Network Inference with Ensemble of trees) R-package
A grammar of graphics for comparative genomics
:chart_with_upwards_trend: :bar_chart: Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.
Graph-linked unified embedding for single-cell multi-omics data integration
A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
Integrated region-based variants synchronization and Annotation for different inbreeding lines
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.