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helske avatar helske commented on August 17, 2024

The result from 1.2.0 are clearly wrong as every row of the transition matrix should sum to one. The current results look correct to me, there are no transitions from state 4, and also no staying there, so the best guess is that the transition distribution is uniform. I think for absorbing state you should define the NA's in your example as 4? Then the last row of the transition matrix is (0,0,0,1).

from seqhmm.

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