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abra

Assembly Based ReAligner

abra2

ABRA2

best_readme_template

🌩最好的中文README模板⚡️Best README template

biocm-seurat-v5

BioCM Seurat R-based image with Seurat v5

bwa-mem2

The next version of bwa-mem

cli11

CLI11 is a command line parser for C++11 and beyond that provides a rich feature set with a simple and intuitive interface.

cutlass

CUDA Templates for Linear Algebra Subroutines

deep-learning

my own deep learing project

dwgsim

Whole Genome Simulator for Next-Generation Sequencing

htscodecs

Custom compression for CRAM and others.

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

htslib

C library for high-throughput sequencing data formats

leetcode

libdeflate

Heavily optimized library for DEFLATE/zlib/gzip compression and decompression

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

pyscenic

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

safestringlib

sambamba

Tools for working with SAM/BAM data

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

seurat

R toolkit for single cell genomics

shasta

De novo assembly from Oxford Nanopore reads.

star

RNA-seq aligner

trans-omics-acceleration-library

vardictjava

VarDict Java port

weighted_semi_global_aligner

wfa2-lib

WFA-lib: Wavefront alignment algorithm library v2