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a-pytorch-tutorial-to-image-captioning

Show, Attend, and Tell | a PyTorch Tutorial to Image Captioning

af2rank

alphared

AlphaFold-initiated replica exchange protein docking

anarci

Antibody Numbering and Antigen Receptor ClassIfication

antibody_benchmark

Antibody-Antigen Docking and Affinity Benchmark

antibody_database

awesome-multi-omics

List of software packages for multi-omics analysis

chroma-pytorch

Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch

colabdesign

Making Protein Design accessible to all via Google Colab!

colabfold

Making Protein folding accessible to all!

core2_glycosyltransferase_prototype

ctrl

Conditional Transformer Language Model for Controllable Generation

data_clone_masked_model

deeph3-distances-orientations

denoising-diffusion-pytorch

Implementation of Denoising Diffusion Probabilistic Model in Pytorch

diffdock-pp

Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)

dig

A library for graph deep learning research

dmasif

dms_opt

dotfiles

egnn

en-transformer_multiatom

Implementation of E(n)-Transformer, which extends the ideas of Welling's E(n)-Equivariant Graph Neural Network to attention

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

galnt_paper_repository

graphormer

This is the official implementation for "Do Transformers Really Perform Bad for Graph Representation?".

gvp-pytorch

Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure

h3

Language Modeling with the H3 State Space Model

localcolabfold

ColabFold on your local PC

masif

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

maskedproteinent