healthml Goto Github PK

active-segmentation

ActiveSegmentation: A Simulation Framework for Benchmarking Active Learning Strategies for 3D Medical Image Segmentation

adascreen

AdaScreen - Ensembles of Screening Rules

adni

antisplodge

Spatial Transcriptomics deconvolution pipeline

antisplodge_turorial

Tutorial for AntiSplodge with all the required datasets to get going!

contig

This is the official implementation of the method ContIG, for self-supervised learning from medical imaging with genomics

d2l-en

Dive into Deep Learning, Berkeley STAT 157 (Spring 2019) textbook. With code, math, and discussions.

deep-learning-lecture

HPI Deep Learning Lecture

deep-learning-notes

My CS231n lecture notes

encode

explainability-requires-interactivity

Code to reproduce experiments in the paper "Explainability Requires Interactivity". See https://github.com/HealthML/StyleGAN2-Hypotheses-Explorer/ for the implementation of the interactive framework.

faatpipe

Functional Annotation and Association Testing Pipeline

fast-lmm

Python version of Factored Spectrally Transformed Linear Mixed Models

gadgetron

Gadgetron - Medical Image Reconstruction Framework

limix

We have moved to https://github.com/limix/limix.

lucid-torch

manim

Animation engine for explanatory math videos

math4ml

Notes on mathematical topics that pertain to machine learning

math4ml-code

Python Code for the Mathematics for Machine Learning Lecture

math4ml-lecture

HPI Mathematics for Machine Learning Lecture

mfd

mml-book.github.io

Companion webpage to the book "Mathematics For Machine Learning"

neurocor

A repository to calculate genetic correlations with brain imaging phenotypes

nextflow-pipeline

The pipeline for analyzing the UKBiobank data, with variant annotation tool VEP and some in-house tools

pathology-ml-model-training

A tool to enable biologists to train a machine learning model for their pathology images.

pysnptools

A Python library for reading and manipulating genetic data.

seak

self-supervised-3d-tasks

spectral

A jekyll theme for the spectral template by html5up.net (@ajlkn). Demo: http://arkadianriver.github.io/spectral. How to jekyll: http://jekyllrb.com/docs/home/. If you intend to use this theme as a blog site with more than a few pages, have a look at my fork at https://github.com/arkadianriver/arkadianriver.com

statisticalgenomics.github.io