Related Issues (20)
- Find factor weight of gene-to-genepheno factor; experiment with setting to high weight manually
- Joint factors for deciding between multiple gp mentions HOT 3
- Check if OMIM diseases picked up correctly, fix if not
- Evaluate precision for multi-gp sentences only
- Try mixing treedlib and ddlib features HOT 1
- Fix inferred-to-Charite comparison for phenos and diseases
- Fix MindTagger genepheno templates: pheno name in pheno_names table, not postprocess
- Gene name is gene feature: experiment with throwing out word itself
- Word sequence features: "cause" missing between gene and pheno is an (almost) sure sign of failure
- Add full gene names; and remove phenos that are picked up as part of full gene name
- Features dependent on sequence length
- DS rules targeting specific gene names in the presence of certain words
- Remove regex DS rules; they might actually be hurting HOT 13
- Fix onto/make_all.sh HOT 1
- We have "NULL" strings in genepheno_relations HOT 1
- Throwing cancer (and in fact, any pheno) messes up joint factors for multiple candidate resolution
- Do distinct gp-level precision analysis
- Make writing evaluation to results_log optional
- Need linear logic for outer/inner factors
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from dd-genomics.