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awesome-scientific-computing

A curated list of awesome articles, software libraries and resources on Scientific Computing

bpcells

Scaling Single Cell Analysis to Milllions of Cells

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

coding-style

安居客代码规范

hdbscan

A high performance implementation of HDBSCAN clustering.

helloworld

Test

how-to-ask-questions-the-smart-way

How To Ask Questions The Smart Way 《提问的智慧》中文版

htseq

Analysing high-throughput sequencing data with Python

itpp

Introduction to Python Programming

pycoqc

Python 3 package for Jupyter Notebook, computing metrics and generating plots from Oxford Nanopore Albacore report

python-fire

Python Fire is a library for automatically generating command line interfaces (CLIs) from absolutely any Python object.

retasep

Implementation of TASEP with reinitiation and particles of arbitrary size.

ribosome-binding-site-calculator-v1.0

The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and design synthetic RBS sequences to rationally control the translation initiation rate. It is used to design synthetic biological systems.

scikit-ribo

Accurate estimation and robust modelling of translation dynamics at codon resolution

spoon-knife

This repo is for demonstration purposes only.

subramaniam_cell_2014

Code for Reproduction of Published Figures

teiser

Tool for Eliciting Informative Structural Elements in RNA

unix_one_liners

xpp

xppy

XPPy is Python interface for Bard Ermentrout's XPP.