Comments (1)
I just ran into this same error, did you ever figure out how to fix it?
!python /Users/halk/MetaXcan/software/SPrediXcan.py
--model_db_path /Users/halk/Downloads/eqtl/mashr/mashr_Whole_Blood.db
--covariance /Users/halk/Downloads/eqtl/mashr/mashr_Whole_Blood.txt.gz
--gwas_file /Users/halk/cleandatawithsnps.txt
--snp_column SNPID
--effect_allele_column EA
--non_effect_allele_column NEA
--zscore_column Z
--pvalue_column P
--keep_non_rsid
--output_file output/spredixcan_TWAS_whole_blood.csv
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Related Issues (20)
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