hacylu Goto Github PK

cellular-diversity-features

Extracting Cellular Diversity Features in Local Cell Cluster Graph from Histology Images

classification-with-featureselection

Routine tools for classification and feature selection using Matlab

cox-survival-model

A implementation of the Cox Proportional Hazard Model for building a regression model for time-to-event

digitalpathomicextraction

Code to extract digital pathology features

flock

Code and GUI for Feature-driven Local Cell Graph (FLocK): New Computational Pathology based descriptors

generalized-log-filter-nuclei-detection

Automatic Nuclei Detection based on Generalized Laplacian of Gaussian Filters

hacylu.github.io

hagnifinder

Predicting Magnification of Digital Histological Images using Deep Learning

haralick_feature_nucleus_wise

Haralick feature nuclei-wise computation, instead of pixels wise within the nuclear surface. way more faster.The idea is 1) gather all pixels inside a nuclei surface 2) construct a Co-occurrence matrix based on all pixels within a nuclear surface 3) calculate the haralick features for each nucleus 4) do statistics

matsurv

Survival analysis in MATLAB

multi-pass-adaptive-voting

Multi-Pass Adaptive Voting for Nuclei Detection in Histopathological Images

oral_epi_segmentation

pathlake_masterclass2020

examples for the course

pathology-he-auto-augment

H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.

pathomics_extraction

preanalytic_image_info

radiallinescanning4melanocytesegmentation

A simple implementation of the radial line scanning method for melanocyte segmentation on skin histology image

smooth_nuclear_surface

show case Hybrid Morphological Reconstructions to smooth nuclear surface

spatil

histomorphometrics that quantify the interaction of TILs and Tumor Cell

utilities

Miscellaneous tools that may be helpful