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13_questions_of_shell

shell十三问--shell教程（markdown 版本）

advanced-shiny

Shiny tips & tricks for improving your apps and solving common problems

anndata2ri

Convert between AnnData and SingleCellExperiment

anndata_usage

Use cases for anndata.

asap

ASAP : Automated Single-cell Analysis Pipeline

aucell

AUCell: score single cells with gene regulatory networks

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-cancer-variant-databases

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

awesome-deep-learning

A curated list of awesome Deep Learning tutorials, projects and communities.

awesome-linux-software

A list of awesome applications, software, tools and other materials for Linux distros.

awesome-shell

A curated list of awesome command-line frameworks, toolkits, guides and gizmos. Inspired by awesome-php.

bioc2018

BioC 2018: Where Software and Biology Connect

bioinformatics_study

bioiformatics software study including R python ......

biscuit_singlecell_imm_icml_2016

R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.

bracer

BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data

cerebellumdev

单细胞图谱代码 A Single-Cell Transcriptional Atlas of the Developing Murine CerebellumCode for processing data

cgmaptools

toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

cmapr

R

code-using-frequently

coronary-progenitor-scrnaseq

cs-video-courses

List of Computer Science courses with video lectures.

cshl-singlecell-2017

Single Cell Analysis course at Cold Spring Harbor Laboratory 2017

deepcpg

Deep neural networks for predicting CpG methylation

depict

DEPICT code, instructions and an example

diagrammer

Graph and network visualization using tabular data in R

dna-methylation-analysis

DNA methylation analysis notes from Ming Tang

doubletdetection

Doublet detection in single-cell RNA-seq data.

dynamictreecut

Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.

dynverse

dynverse is created to support the development, execution, and benchmarking of trajectory inference methods. 🌌