gullyburns Goto Github PK

.github

basic-jena-scripts

Some simple scripts to work with MONDO data

biomedical

Tools for curating biomedical training data for large-scale language modeling

chat-alhazen

Fork of chat-langchain with minimal edits for reuse on open-source tools.

cryoeto

databricks_to_nbdev_template

Template for nbdev projects

detecting-scientific-claim

Extracting scientific claims from biomedical abstracts (powered by AllenNLP), demo:

doccano

Open source text annotation tool for machine learning practitioner.

docker-datascience

Dockerfile base designed to provide a sharable, stable set of libraries for data science work. Thanks to the awesome Florian Geigl (@floriangeigl) for making his implementation available.

drawio

Source to www.draw.io

electron

:electron: Build cross-platform desktop apps with JavaScript, HTML, and CSS

gpt-researcher

GPT based autonomous agent that does online comprehensive research on any given topic

gullyburns.github.io

My professional blog: 'Scientific Knowledge Engineering Meets Data Science'.

ipyannotate

Jupyter Widget for data annotation

langchain_local_llm_dev

Developing local LLMs for use within LangChain

meta-full-text-mining-ner

Open Source Code for Extraction of Methods and Datasets from Biomedical Papers

molecular_interaction_evidence_fragment_corpus

nbdev-jekyll-theme

Porting the theme to CZI

nextjs-template

Boilerplate to start with Docker setup (Next.js included)

nxml2txt

NLM .nxml to text format conversion

papermage

library supporting NLP and CV research on scientific papers

pdf-tokens-type-labeler

pdf_paragraphs_extraction

Copy of huridocs PDF extraction library

pypdf

A pure-python PDF library capable of splitting, merging, cropping, and transforming the pages of PDF files

ro-biocuration2019

Research Object describing source code and data for Burns et al (2019)

rst-napari

Code for finding ontology term matches in Napari plugin descriptions

scholarphi

An interactive PDF reader.

scigraph-docker

SciGraph docker image and monarch specific configurations

the-spirit

WebGL Experiment

uimabioc

Simple interaction code to define the BioC as a UIMA type and provide support for it's use in text mining applications based on the CleartTk UIMA system.