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colab-r-libs

A test to see how I could save installation time for R libs each time I start a Colab notebook

colab-r-libs-gviz

R libraries installed in Colab to use Gviz

dea.r

Script to automate differential expression analysis using DESeq2, edgeR or limma-voom

epromoters

Genome-wide characterization of mammalian promoters with distal enhancer functions

gc-conda-recipes

Conda recipes for tools not fitting conda-forge or bioconda

ggrastr

Raster geoms for ggplot2

greatr

A command-line tool and R package to automate multiple samples queries to GREAT and produce useful and nice-looking summary plots

igv-webapp

IGV Web App

knitr

A general-purpose tool for dynamic report generation in R

mw-belhocine2021

Metaworkflow module for the analyses done for the article "Dynamic of broad H3K4me3 domains uncover an epigenetic switch between cell identity and cancer-related genes"

mw-cieslak2019

MetaWorkflow module for the bioinformatics analyses published in "Epigenomic dynamics of human T-cell precursors reveal TCRA enhancer silencing by HOXA"

mw-data

Metaworkflow module to store some medium size files needed by rules in mw-lib, e.g. for tests, capstarrseq, ...

mw-gcthesis-oral

Metaworkflow plugin to compile my thesis oral presentation

mw-ibrahim2022

Source code for the analyses published in "Transcriptomic studies of antidepressant action in rodent models of depression: a first meta-analysis"

mw-lib

Metaworkflow library of generalised Snakemake rules

mw-miallot2021

Code for the analyses from the review "Metabolic landscapes in sarcomas"

mw-miallot2022

Source code for the analyses published in "The coenzyme A precursor pantethine mitigates sarcoma growth through promotion of type 1 immunity"

mw-pekowska2019

mw-broad

pan-b-cell-methylome

Code accompanying the findings in Duran-Ferrer 2020, Nat Cancer. The epiCMIT mitotic clock calculator and a Pan B-cell tumor classifier algorithm are provided.

sjaracne

Scalable Tool for Gene Network Reverse Engineering

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

startbootstrap-freelancer

A flat design, one page, MIT licensed Bootstrap portfolio theme created by Start Bootstrap

wopmars