Comments (2)
This is due to this line:
dirname(system("which mafft", intern = T))
is returning nothing, which is then appended to "/" and passed to get_mafft_path
, which interprets it as a user-defined path to a directory and adds "mafft" to it.
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@knausb Can you test again? The new commit should address that
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Related Issues (19)
- Create tests
- add biblio on vignette
- Adapt shiny app
- Replace perl one-liners with R equivalent? HOT 2
- Testing package in windows HOT 3
- System which calls HOT 1
- CRAN issues HOT 13
- Consider adding a few more examples of pathogen effectors HOT 2
- Add a column with the length of the effectR candidate in effector.summary
- Separation of MAFFT and HMM search HOT 3
- Issue related to HMM threshold HOT 1
- HMM failed, please supply a valid absolute path to ORFs HOT 18
- Regarding regex pattern
- Regarding regex pattern HOT 1
- Fatal exception (source file esl_buffer.c, line 1599): zero malloc disallowed HOT 1
- custom pattern not giving domain positions HOT 2
- Mafft alignment failed to save HOT 1
- Close this "Does not find CRN domains in P. infestans proteome"
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