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An experienced bioinformatician specialising in whole genome sequencing and single cell RNA seq analysis, I am a named contributor on nf-core/sarek and have been responsible for the development of internal R and python packages.

Grant Neilson's Projects

grantn5 icon grantn5

Config files for my GitHub profile.

infercnvpy icon infercnvpy

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

maftools icon maftools

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

sarek icon sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

website icon website

Code and files for the main nf-core website.

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