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aegis

Application for Epidemiological Geographic Information System (AEGIS): a system for semi-automatic GIS visualization based on the OMOP Common Data Model.

andromeda

AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.

appendicitis

appium

:iphone: Automation for iOS, Android, and Windows Apps.

atlas

ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

capr

Cohort definition Application Programming in R

cdmddlbase

An R package for generating the documentation and DDL (Data Definition Language) for the Common Data Model in various SQL dialects

characterization

Various types of characterizations of a target and outcome cohort.

characterizingincidenceaesi

Characterizing the incidence of adverse events of special interest for COVID-19 vaccines across eight countries: a multinational network cohort study

circe-be

CIRCE is a cohort definition and syntax compiler tool for OMOP CDMv5

cohortdiagnostics

An R package for performing various cohort diagnostics.

cohortdiagnosticspaper

cohortgenerator

An R package for instantiating cohorts using data in the CDM.

cohortmethod

An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

cohortpathways

cohortpathwaytest

cohortvisualization

commondatamodel

Definition and DDLs for the OMOP Common Data Model (CDM)

covcoagoutcomediagnostics

A CohortDiagnostics package to assess coagulopathy outcomes of interest

covid19characterizationcharybdis

Characterizing Health Associated Risks, and Your Baseline Disease In SARS-COV-2 (CHARYBDIS) - Package is in active development. Not released for broad use yet.

covid19cohortevaluation

A central package for evaluation the cohorts used in the various Covid-19 studies

covid19vaccineaesiincidencecharacterization

Calculating the background rates of adverse events of special interest (AESI) for the COVID vaccines

covidphenotype

covidphenotypeusingprediction

databaseconnector

An R package for connecting to databases using JDBC.

era-constructor

This is a repo that contains standardized code for hte construction of Drug Eras, Dose Eras and Condition Eras

etl-synthea

Conversion from Synthea CSV to OMOP CDM

eunomia

A standard CDM dataset for testing and demonstration purposes.

featureextraction

An R package for generating features (covariates) for a cohort using data in the Common Data Model.

howoften

[under development] Large-scale incidence characterization