Comments (1)
https://youtu.be/tM4JrCWZpwA?t=718
# Thinking about using nix/rix instead of docker (or maybe add as an option)
# Installation ------------------------------------------------------------
# Users need to install rix and Nix
# Install rix
install.packages("rix", repos = c("https://b-rodrigues.r-universe.dev", "https://cloud.r-project.org"))
# Install Nix
# From terminal: curl --proto '=https' --tlsv1.2 -sSf -L https://install.determinate.systems/nix | sh -s -- install
# So /nix environment and files are not in the root folder
# Edit /etc/fstab and add:
# /home/path_to/nix /nix none bind 0 0
# Create Nix file ---------------------------------------------------------
library("rix")
path_default_nix <- "~/Downloads/TEST_NIX"
rix(r_ver = "latest",
r_pkgs = c("cli", "dplyr", "DT", "forcats", "ggplot2", "gtsummary", "here", "janitor", "patchwork", "psych", "purrr", "readr", "renv", "rmarkdown", "rstudioapi", "stringr", "tarchetypes", "targets", "testthat", "tibble", "tidyr", "visNetwork"),
system_pkgs = "pandoc",
git_pkgs = NULL,
# ide = "rstudio",
ide = "other",
shell_hook = "Rscript -e 'targets::tar_make()'", # Will launch the pipeline
project_path = path_default_nix,
overwrite = TRUE,
print = TRUE)
# COPY PROJECT TO THE NIX FOLDER
FILES = list.files(".", recursive = TRUE)
R.utils::copyDirectory(".", path_default_nix)
# Build (on terminal)
nix-build
# Launch shell (on terminal)
nix-shell
# If you want to open rstudio in the nix-shell and it fails:
export QT_XCB_GL_INTEGRATION=none
rstudio
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Related Issues (20)
- Support reading files from a zip? HOT 1
- BUG. targets::tar_renv() fails in setup when downloading from Github
- Experimental tasks
- tests/manual_correction and data/999/ folders should NOT be part of the standard downloadable project
- parameter in run_initial_setup() to select sensitive tasks
- Implementar nuevas tareas
- Maker/Helper: DEMOGR HOT 1
- Avoid grepl in prepare_TASK
- REMEMBER: create report sub_protocol
- create_targets_file should allow to change the folder_data and folder_tasks parameters of create_targets_file
- Should not use all items for total score of SWBQ
- auto_reliability should use omega as default
- folder_data and folder_tasks parameters should be usable from run_initial_setup
- Parametro similar a accept_discarded para continuar donde lo dejaron
- Implement data blinding versions of the analysis dataset HOT 1
- move_sensitive_tasks_to_vault() does not work when we have a zip file in data
- Error in create_new_task() prepare_TEMPLATE.R is deleted
- create_codebook() is not adapted to new structure of prepare_TASK()
- output_formats does not reach save_files
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