Comments (4)
Is it possible to provide the input files to reproduce this result?
from deepvariant.
I believe @kishwarshafin was able to reproduce the issue and is currently looking into a fix.
Keeping this open for now.
from deepvariant.
Hi @ColinR01 ,
Please try the following docker that has the patch incorporated that should fix your issue:
docker pull google/deepvariant:CL602468145
docker pull google/deepvariant:CL602468145-gpu
from deepvariant.
@ColinR01 , Can you please try the v1.6.1 docker? If the issue isn't resolved, please feel free to reopen this bug.
from deepvariant.
Related Issues (20)
- RNA-seq pre-processing HOT 4
- Developers notes / environment for modifying code HOT 4
- Shuffle script not compatible with versions of tensorflow packages? HOT 4
- Fatal Python error: Segmentation fault HOT 12
- Singularity import issue and possible solution HOT 2
- How to merge Pacbio gvcfs? HOT 2
- Issue testing custom model HOT 10
- Error about expected cur_seq.size() < Max_READ_LEN HOT 2
- Missing --gpus flag in deeptrio HOT 1
- How to set threshold to filter vcf files HOT 2
- I am confusion about your deep learning architecture. HOT 3
- error in training DeepVariant HOT 13
- Restarting from post process variants step of deeptrio HOT 4
- BrokenPipeErro during postprocess_variants HOT 8
- Question about training HOT 1
- unable to run deepvariant using conda HOT 6
- Fatal Python error: Segmentation fault HOT 3
- How to get list of variants after make_examples step? HOT 1
- Highest mapping quality = 42 in bowtie2 HOT 3
- Output files are missing after running deepvariant. HOT 10
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from deepvariant.