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astral

astRal: An R/Bioconductor project for projection of gene expression across space and time

biolib

Python library of my own personal compbio utils

brain_projection_study

Projection analysis study

c9bac_mouse_m1_scrna_study

C9BAC Mouse M1 scRNA-Seq study

cogaps

Bayesian MCMC matrix factorization algorithm

containers

Singularity Containers for Goff Lab

crisprtool

CRISPRtool

cummerbund

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/cummeRbund.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=cummeRbund.

cummerbund-bioc-bridge

czi-rfa-2017

Collaborative application for Chan-Zuckerberg Initiative Human Cell Atlas RFA 2017

destiny

R package for single cell and other data analysis using diffusion maps

developing_mouse_retina_scrnaseq

10x single cell RNA-seq data from the developing mouse retina

fals_analysis

glmpd

GLM-based Projection Drivers (working name)

goff-czi-report

Realtime Progress report for CZI funded project

goff_czi_neurodegeneration_barres_2018

Application for 2018 CZI Ben Barres Early Career Acceleration Award

goff_lab_manual

Laboratory Manual of Policies, Procedures, Expectations, and Quirks of the Goff Lab @ Johns Hopkins

goff_lab_styles

Collection of styles/templates/imagery for research products from the Goff Lab

gofflab.github.io

Goff Lab

gofflab_sc_kallisto

Single Cell Preprocessing workflow for Kallisto + RNAVelocity for Goff Lab Projects

gofflab_tasks

Repository for tracking Goff Lab To Dos

hcrprobedesign

Custom python package for selection, design, and initiator addition for HCR probes.

jcms-root

The Jackson Laboratory Colony Management System

jhuquantneuro2023

jupyterhub-deploy-teaching

Reference deployment of JupyterHub and nbgrader on a single server

lincer-1

De novo discovery of long non-coding RNAs

lincer_orig

Original (pre-refactorization) lincer pipeline from valor

lncrna-cell-type-specificity

Analysis of Linnarsson Data for lncRNA specificity paper.

loom-viewer

Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format

motor_cortex_cell_type_matching

Mapping BICCN motor cortex cell types onto morphologically defined cell types.