gladstone-institutes Goto Github PK

alleleanalyzer_bcft_rt

A software tool for personalized and allele-specific CRISPR editing.

annotate-genes

Filter GO annotations for a list of genes using mygene.info via R

awesome

A curated list of resources that members of our group have found useful

bc-am-1148

R Shiny application for scRNA-seq

bc-tm-1123-kc

Tamer Mohammed | scRNA-seq

bibliometrics

bioinformatics-datasets

public datasets for testing, benchmarking and comparison

bioinformatics-r-functions

Collection of generally useful R functions

bioinformatics-workshops

Workshops presented by the Gladstone Bioinformatics Core

c3_r_bootcamp_bonus_day

Slides and materials for the last day of the C3 R bootcamp with topics chosen by the students

gb-jl-1189-jeremy-gedi

GEDI value cutoff threshold estimation

gi-bulk-rnaseq

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

git-flight-rules

Flight rules for git

gladstone.org

hota_et_al_2021_brm_safeguards_canalization_cardiac_diff

interactive-enrichment-analysis

A set of Shiny apps to provide interactive enrichment analysis and exploration of results.

knitr_case_studies

Inference case studies in knitr

mdc-971-kc

HPV type identification

monkeypipeline

pfocrinpathwayanalyses

post-pipeline_rna-seq_workshop

RNA-seq workshop starting from a matrix of counts, with a **primary focus on linear modeling for differential expression**

r_docker

Docker container for genomics analyses in R.

ranksummaries

code for the rankSummary analysis. Used for Morris Water Maze analyses

raslseqtools

RASLseq FASTQ to RASLprobe counts.

rmedpower

rmedpower2

Helping design and analyses of data from repeated measures experiments

scrna-seq_shiny_app

R Shiny application for scRNA-seq

scrna-seq_shiny_app_dashboard

seqpipeline

stancon2018helsinki_intro

StanCon2018 Helsinki Tutorial