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msstatstmt

niceplots

A collection of visualization tools

notebook

Jupyter Interactive Notebook

optitype

Precision HLA typing from next-generation sequencing data

pandoc

Universal markup converter

panorama

R package for interactive visualization and analysis of single-cell data

pcatools

PCAtools: everything Principal Components Analysis

phenograph

Subpopulation detection in high-dimensional single-cell data

premessa

R package for pre-processing of mass and flow cytometry data

py3movielisting

Python 3 based Dir to HTML Movie listing generator (IMDB Details)

pylattice

A python library for advanced lattice light-sheet image analysis

python4deepimagej

pythondatasciencehandbook

Python Data Science Handbook: full text in Jupyter Notebooks

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

qualpalr

Automatic Generation of Qualitative Color Palettes

rna-seq-in-the-cloud

An Easy to Use Analysis System for All Human Public bulk RNAseq Data!

rnaseq

Deprecated, see https://labsyspharm.github.io/rnaseq/

saucie

scaffold

scaffold

single-cell-debarcoder

deconvolution of barcoded CyTOF data

singlecellworkshop

spade

SPADE: Spanning Tree Progression of Density Normalized Events

spadevizr

SPADEVizR: an R package for Visualization, Analysis and Integration of SPADE results.

stanfordnlp

Official Stanford NLP Python Library for Many Human Languages

statisticalscaffold

t-cell-relation-extraction

Literature mining for T cell relations

tcrecepy

Machine learning to distinguish two types of T-cell receptor subregions.

teimc

Python code for analysis of imaging mass cytometry data of tellurium isotopes

tensorboard

TensorFlow's Visualization Toolkit

tensorflow

An Open Source Machine Learning Framework for Everyone