gitter-lab Goto Github PK
Name: Gitter Lab
Type: Organization
Bio: Computational biology research group at UW-Madison and the Morgridge Institute
Name: Gitter Lab
Type: Organization
Bio: Computational biology research group at UW-Madison and the Morgridge Institute
End-to-end active learning pipeline for virtual screening and drug discovery
Demo manubot manuscript for BDS SROP students
Scripts for analyzing HIV-1 producer cell proteomic and phosphoproteomic data
Analysis of influenza PB2 protein interactions
Lag Penalized Weighted Correlation for Time Series Clustering
Examples for running LPWC that are executable within Binder
Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
Pretrained METL models with minimal dependencies
Supplementary datasets and scripts for the METL manuscript
High-throughput framework for running molecular simulations for METL
Pathway reconstruction with a minimum cost flow algorithm
Former repository for the Machine Learning for Biology workshop. Moved to https://github.com/carpentries-incubator/ml4bio-workshop.
A graphical interface for sklearn classification to introduce machine learning to biologists
Test pandas and networkx in Jupyter notebooks
Neural networks for deep mutational scanning data
Scripts, data, and supplementary information for "Graph algorithms for predicting subcellular localization at the pathway level"
Parameter advising for biological pathway creation algorithms
Virtual screening on PriA-SSB with the AMS and Enamine REAL libraries
Virtual screening on PriA-SSB and RMI-FANCM with the LifeChem library
Pathway-Regularized Matrix Factorization
Improving subnetwork identification with pathway-based simulation
Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data
Supplemental scripts and analyses for the SINGE manuscript
Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference
Jupyter notebooks demonstrating a microscopy machine learning image analysis workflow
Test repo for notification integration
Temporal Pathway Synthesizer
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Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
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Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
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Data-Driven Documents codes.
China tencent open source team.