girke-lab Goto Github PK
Name: Girke Lab
Type: Organization
Bio: Research and Teaching Repos
Location: UC Riverside
Name: Girke Lab
Type: Organization
Bio: Research and Teaching Repos
Location: UC Riverside
Cross-target analysis of small molecule bioactivity - This is the official development repository
Cell Wall Navigator (CWN)
OpenBabel wrapper package for R
bioconductor 2.14
Cheminformatics Toolkit for R
This is defunct, now replaced with https://github.com/girke-lab/ChemmineR
bioconductor version 3.1
ChemMine Tools: open source web framework for small molecule analysis
Query and customization interface for compound annotation database from DrugAge, DrugBank, CMAP02 and LINCS databases. It also stores the structure SDF datasets for compounds in the above four databases.
Development of a Genome-Scale Cell Type-Specific Gene Expression Map
R package for querying the DrugBank database in batch locally
Compound databases for use with ChemmineR
Accelerated similarity searching of small molecules (bioconductor package)
bioconductor version 3.1
Mismatch Tolerant Maximum Common Substructure Searching
bioconductor version 2.14
The Genome Cluster Database
R/Bioconductor package including the Gene Expression Signature Search (GESS), Function Enrichment Analysis (FEA) methods and supporting drug-target network construction for visualization
Reference datasets used by the associated signatureSearch software package
Sub-HMM data and tools
Code to supplement "Large-scale bioactivity analysis of the small-molecule assayed proteome"
test-tgirke created by GitHub Classroom
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