giancarlocroce Goto Github PK
Type: User
Company: University of Lausanne, Ludwig center for cancer research
Twitter: GiancarloCroce8
Location: Lausanne, Switzerland
giancarlocroce's Projects
dca2pdb
dca_polymorphism_ecoli
Decipher polymorphism in E. coli strains with coevolutionary models
dca_sars-cov-2
Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes
directace
C++algorithm to obtain numerically approximate solutions of the direct Ising problem
ergo-ii
ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
giancarlocroce.github.io
immrep_2022_tcrspecificity
ireceptor_script
Python script to search TCRs with specific CDR3 sequences in the iReceptor Gateway (https://gateway.ireceptor.org)
kingfisher-download
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
mcmc_ising_potts
Montecarlo-metropolis algorithm for ising spin 0,1 / ising spin +1,-1 / generalised potts model
phydca
Routine to predict interacting protein domains using co-evolutionary modeling
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