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This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolkit for finding and visualizing BLAST hits for gene clusters within multiple bacterial genomes.
A pipeline for performing genome-wide association tests for bacterial genomes.
A flexible pipeline for complete analysis of bacterial genomes
Bioinformatics code libraries and scripts
Bioinformatics Tools
Official home of genome aligner based upon notion of Cactus graphs
python implementation of the CART algorithm
A tool to circularize genome assemblies
Gene cluster comparison figure generator
ITEP - Integrated Toolkit for Exploration of microbial Pan-genomes
A perl script to calculate dN/dS in batch based on Nei-Gojobori Method (the same as MEGA)
Rapid comparison and dereplication of genomes
EMBL GEMs: A collection of GEnome-scale Models for bacterial species
An R package performs over-representation test in multiple biological/annotation databases.
Scripts and reference libraries at Kostas lab.
Helper Perl scripts and tree files associated with the EukProt database of genome-scale eukaryotic protein sequence data sets.
Fast Whole-Genome Similarity (ANI) Estimation
Calculate circos format data of GC content and GC skew from genome data.
Automatically submit jobs to the Genome-to-Genome Distance Calculator (GGDC) website.
Python library to handle Gene Ontology (GO) terms
Tools for analyzing trees
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Make based mRNA-seq pipeline (QC, HISAT2, featureCounts). This is a gene level workflow for Single-End Illumina reads.
iFeature is a comprehensive Python-based toolkit for generating various numerical feature representation schemes from protein or peptide sequences. iFeature is capable of calculating and extracting a wide spectrum of 18 major sequence encoding schemes that encompass 53 different types of feature descriptors. Furthermore, iFeature also integrates fi
iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequences, 3D structures and ligands. To the best of our knowledge, iFeatureOmega supplies the largest number of feature extraction and analysis approaches for most molecule types compared to other pipelines. Three versio
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.