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benchmarking

This repository contains variant profiles for samples used to benchmark somatic genome analysis methods in Tanner et al

data

data

heterogenesis

Simulates genomes for multiple related clones in a heterogeneous tumour, along with a matched germline genome.

nanosim

Nanopore sequence read simulator

randomsplitbam

Python script to randomly split reads in a bam file into two output bam files, with a user defined fraction of reads in each output. Paired end reads are written with corresponding read pairs in the same output file.

rna_processing

scrna_smartseq2

short_scripts

w-wessim

A tool for in silico whole-exome sequencing to create realistic sequencing reads from a given genome sequence.

w-wessim2

A tool for in silico whole-exome sequencing.