george-githinji Goto Github PK

address-book-in-shell

africa-covid19-genomics

Invite only repo to share code, data and info to reproduce.

artic-ebov

Repository of documents and data for Ebola virus

artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

artic_utils

simple scripts and utilities for processing SARS-CoV-2

asmngs20

ASMNGS20 - 2020 Conference Details

bda_r_demos

Bayesian Data Analysis demos for R

biod

D modules for computational biology and bioinformatics

biod.github.com

The BioD website

biod.github.io

The BioD website

biogems.info

Tools for keeping track of biogems through http://biogems.info/

bioruby-cd-hit-report

A bioruby wrapper for parsing and reading CD-HIT cluster reports

bioruby-dbla-classifier

This plugin extends Bioruby's AminoAcid sequence class by adding methods for analysing PfEMP1 DBL-alpha sequence tags

bioruby-isoelectric_point

A bioruby plugin for calculating the isoelectric point of a protein

block-sharing-networks

A command line program for creating DBLa block-sharing networks

chain_ml

CHAIN Machine Learning Repository

civet

coastal-kenya-covid-genomics

cwl-workflows

Workflows written in common workflow language (CWL)

dbla-caf-parser

A program to work with CAF files for DBL sequences

dgrtwo.github.com

My website

estimate_genome_size.pl

Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish

fadapa

FAstqc DAta PArser - A minimal parser to parse FastQC output data.

fastqcqualityreports

Uses ggplot2 to provide improved plots for FastQC read quality data

find-dbla-mutations

finds mutations given a fasta file with a list of sequences of equal length.

george-githinji.github.io

The Biorelated blog

guidescaff

A prototypical scaffolding pipeline for genomic assemblies.

highliner

An implementation of LANL's Highlighter web app in R for batch processing and scaling

htslib

C library for high-throughput sequencing data formats

hyphy

HyPhy: Hypothesis testing using Phylogenies