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amr

amr_finder

conti_natgen_2020

Example JAM code from the Conti, Darst et al., Nature Genetics 2020 publication

cosmo

cosmo

deeplearningr

Deep learning with R

dl_workshop

expandar

R Package for Interactive Panel Data Exploration

geo-deep-learning

Deep learning applied to georeferenced datasets

gpt-derm

An implementation of model parallel autoregressive transformers on GPUs, based on the DeepSpeed library.

gwasglue

Linking GWAS data to analytical tools in R

lassovariants

Python codes for Lasso feature selection

ldlinkr

LDlinkR

learn-datascience-for-free

metaai

A deep learning library specialised for meta-learning, based on fastai and Pytorch

mlrepo

non-cognitive

Code used for the GWAS-by-subtraction of non-cognitive skills and follow-up analyses

openfold

Trainable & open-source PyTorch reproduction of AlphaFold 2

orbit

Wrapper of probabilistic languages to provide Bayesian time series modeling and inference

petal

PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis

phewas

The PheWAS R package

practical-machine-learning-with-python

Master the essential skills needed to recognize and solve complex real-world problems with Machine Learning and Deep Learning by leveraging the highly popular Python Machine Learning Eco-system.

py-metagenomics

Some python libs and scripts for metagenomic analyses

scanalysis

searching-for-latent-viruses-in-human-whole-genome-sequencing-data

Students: Yura Orlov, Nadya Pogodina, Alisa Morshneva Supervisors: Valery Ilinsky, Alexander Rakitko (Genotek, Moscow) Bioinformatics Institute, Saint-Petersburg, 2019

sib-introduction-to-r-shiny

SIB Introductory course to R Shiny

simubiome

Simulation tools to assess microbiome and genome in complex trait prediction

soothsayer

High-level analysis package for (bio-)informatics

stats-illustrations

R & stats illustrations by @allison_horst

tez

tidycdisc

Demo the app here: https://nate884.shinyapps.io/tidyCDISC/

tidytuesday