Comments (3)
Still around as fast if you consider wall-clock time (optimized usage of multi-threading compared to version 1), not as memory-efficient (but still around an order of magnitude more memory efficient than other assemblers e.g. Megahit), much improved assembly quality (due to the use of graph simplifications instead of unsimplified graph traversal). We're supposed to release a paper some day about all that, but this is the informal version.
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We expect the paper and the mature version so much.
from minia.
realistically and unfortunately, I don't see a short-read assembly paper being published anymore in this era of long-read assembly. But feel free to be in touch if you need to still perform short-read assembly
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Related Issues (20)
- Install fails HOT 1
- minor typo HOT 1
- Add -version flag HOT 1
- Minia 3, git commit fatal: not a git repository HOT 1
- Can't locate the Minia-pipeline multi kmer script HOT 4
- Segmentation fault when using Minia 3 HOT 7
- how to set sveral kmer HOT 4
- multithread with minia HOT 2
- An error occurred while running HOT 3
- What about Haplotype reconstruction and Minia HOT 1
- -max-memory ignored HOT 4
- multiple input files HOT 1
- Is minia suitable for high heterozygous rate plant genome? HOT 5
- minia doesn't assemble high-coverage regions
- Log Message HOT 1
- minia generates non-deterministic assemblies? HOT 2
- Can I use minia to assemble rna-seq data? HOT 1
- Assembly Graph HOT 2
- using 10X data HOT 1
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