Comments (3)
Hi there
This is a bug from VCF creator. Sorry for the trouble.
Would it be possible to have access to megares_full_database_v2.00.fasta
, to test_reads.txt
, and to the read files listed inside test_reads.txt
?
Best,
Pierre
from discosnp.
A potential source of error (our fault) is that the headers of your reads contain the '|' character, used as a delimiter in our framework.
Could you please try modifying the MEG_6964|Drugs|Tetracyclines|Tetracycline-resistant_16S_ribosomal_subunit_protein|TET16S|RequiresSNPConfirmation
format for something as MEG_6964;Drugs;Tetracyclines;Tetracycline-resistant_16S_ribosomal_subunit_protein;TET16S;RequiresSNPConfirmation
?
from discosnp.
Hi there, thank you for the response! I will give that a try and update with the results.
Best,
Jared
from discosnp.
Related Issues (20)
- SNP ID in VCF file with reference genome HOT 3
- problem running disco snp HOT 8
- compatibility with HiFi reads HOT 3
- Mixing of 0-based and 1-based position in the outputed vcf file of DiscoSNP++ HOT 6
- Using Disco SNP to find sex markers; calling on a cohort with males and females HOT 1
- Requires python3 but calls python2 HOT 1
- DiscoSnp VCF record; Ref allele does not match Assembly Used HOT 8
- Type of Variant (Ty) format error in .vcf HOT 1
- Options for .vcf filtering HOT 1
- Problem running discoSnpRad HOT 4
- Call to python 2 in run_discoSNP++.sh HOT 2
- EXCEPTION: cannot open ./trashme_3684_dsk_partitions_gatb/parts.360 HOT 4
- Multiple reference alleles output HOT 3
- error: there was a problem with readFileName Dumping HOT 3
- error: there was a problem with readFileName Dumping HOT 2
- Trouble filtering with vcftools HOT 2
- Equivalent information between discosnp and STACKS2 HOT 8
- Unable to open VCF file in IGV - SAMPLE metainformation line HOT 3
- Nucleotide diversity from DiscoSnp HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from discosnp.