Name: Friederike Dündar
Type: User
Company: Catenion GmbH | Weill Cornell Medicine
Bio: Scientist, Consultant, Biomedical Data Wrangler & Product Owner
Location: Berlin / New York
Blog: https://scholar.google.com/citations?hl=de&user=ooN4SPsAAAAJ
Friederike Dündar's Projects
pipeline for allele-specific mapping of short reads
A powerful toolset for genome arithmetic.
A pipeline to approximate the immunogenicity of peptides resulting from cancer mutations based on structure and other factors.
collection of cell labels from published single-cell omics data sets
toy example for R packages
collection of scripts used for Chelmicki and Duendar et al. 2014
clean some datasets
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
An R package to analyze AVID-seq data
Clone of the Bioconductor repository for the DropletUtils package, see https://bioconductor.org/packages/devel/bioc/html/DropletUtils.html for the official development version.
A pipeline for reproducible transcriptome-wide measurements of mRNA stability
Easy single cell analysis platform for enrichment
Please download the latest version. "HIVSeqinR" is an R-based pipeline that processes HIV near-full-genome sequences and classifies genomes into "intact" or into various "defective" categories. Please see Wiki tab for more information.
Quality control for MinION sequencing data
Personal notes about work- and coding-related topics
A Shiny App to Support Proteomic Correlation
collection of various scripts
Package for creating markdown versions of R package reference manual.
Collection of scripts used for the analysis of high-throughput sequencing data (RNA-seq, ATAC-seq, ChIP-seq) for Scott et al., 2019.
A (history-edited) clone of https://github.com/dviraran/SingleR, in preparation for a Bioconductor submission.
Contents to be compiled into the SingleR book.