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c3_callgraphs

Cogent3 call graphs

c3dev

cogent3 developer tools

chickenpy

Object-oriented cooking simulator

cogent3

Comparative Genomics Toolkit 3

demoproject

Initial project using click

dotfiles

nix ricing

fredjaya

gmos-sample

Sample files to show different behaviour when identical files are used vs. removing a sequence as a query

gtdb_trees

Application of pandemic-scale tools for building the GTDB tree

mixturemodelhmm

Post-processes the output of phylogenetic mixture models using HMMs

msmc-nf

Nextflow pipeline for demographic reconstruction with MSMC

mutscape

Variant calling pipeline to estimate A. m. capensis mutation rates

parrotfish_analyses

Evolutionary analyses of the Parrotfish genome

polcompr

R package for plotting Political Compass results

poolpower

Power and sample size calculations for surveys using pool testing (AKA group testing)

presentations

past workshops, talks, posters

qmk_firmware

Open-source keyboard firmware for Atmel AVR and Arm USB families

rec-bench

automated benchmarking of recombination detection methods

scripts

collection of small, assorted scripts

spw23_iqtree

IQ-TREE workshop for the Sydney Phylogenetics Workshop 2023

topofind

Finding topologies for MAST

upe-squelchers

Population genetics of Uperoleia frogs

wrassembly

De novo assembly of reef fishes with long and linked reads

zmk-config