frank-y-liu Goto Github PK

adam

A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

alphazero_gomoku

An implementation of the AlphaZero algorithm for Gomoku (also called Gobang or Five in a Row)

bayesopt

BayesOpt: A toolbox for bayesian optimization, experimental design and stochastic bandits.

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

caffe

Caffe: a fast open framework for deep learning.

carvana-challenge

My repository for the Carvana Image Masking Challenge

chainer

A flexible framework of neural networks for deep learning

cpp-taskflow

Fast C++ Parallel Programming with Task Dependency Graphs

docker-headless-vnc-container

Collection of Docker images with headless VNC environments

docker-ubuntu-vnc-desktop

A Docker image to provide web VNC interface to access Ubuntu LXDE/LxQT desktop environment.

docker-ubuntu_22-04-novnc

Ubuntu 22.04 in a docker container with display in your web browser

dreamplace

Deep learning toolkit-enabled VLSI placement

dtcraft

A High-performance Cluster Computing Engine

fastai

The fastai deep learning library, plus lessons and tutorials

fermi-lite

Standalone C library for assembling Illumina short reads in small regions

fourier_neural_operator

Use Fourier transform to learn operators in differential equations.

galois

Galois: C++ library for multi-core and multi-node parallelization

gatk

Official code repository for GATK versions 4 and up

gatk-ancient

gatk-bwamem-jni

JNI code for bwa mem

gatk-fermilite-jni

JNI code for fermi lite.

gatk-native-bindings

GATK Native Bindings Repository

gatk-protected

GATK4 development of the license-protected part of the toolkit

hamiltonian-nn

Code for our paper "Hamiltonian Neural Networks"

hpolib

HPOlib is a hyperparameter optimization library. It provides a common interface to three state of the art hyperparameter optimization packages: SMAC, spearmint and hyperopt. This package is discontinued, please read the longer note in the info box below.

jaxopt

Hardware accelerated, batchable and differentiable optimizers in JAX.

jbwa

Java Bindings (JNI) for bwa

mask_rcnn

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

mcts

Python Implementations of Monte Carlo Tree Search

monte-carlo-tree-search

Monte carlo tree search in python