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4c_mapping

A mapping pipeline that maps and filters 4C data.

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

chipseqspikeinfree

A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

coolpuppy

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

crane-nature-2015

code associated with crane-nature-2015, 10.1038/nature14450

cworld-dekker

perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)

fca_liver

All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).

francisfa.github.io

Francisfa Blog ->

gwa_tutorial

A comprehensive tutorial about GWAS and PRS

hic_tools

A collection of tools for Hi-C data analysis

juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

ngs-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

nichenetr

NicheNet: predict active ligand-target links between interacting cells

open2c_examples

treatHi-C

pgltools

Paired Genomic Loci Tool Suite

plot-r

puzzle

🌷 使用5000张二次元图片生成海报大图，计算颜色相似度。Make a poster with 5000 pictures，Python spider and Color similarity measure

pygenometracks

python module to plot beautiful and highly customizable genome browser tracks

python-100-days

Python - 100天从新手到大师

r4ds

R for data science

sambamba

Tools for working with SAM/BAM data

scrna.seq.course

Analysis of single cell RNA-seq data course, Cambridge University, UK