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agingmousebrainccinx

Predicted cell-cell interactions of the aging mouse brain

antihypertensive-med

Repository containing the code for the paper: "Investigating the potential effects of antihypertensive medication on psychiatric disorders: a mendelian randomisation study"

bimmer

brain_pqtl

clash-verge

A Clash GUI based on tauri. Supports Windows, macOS and Linux.

colochelpr

Helper/wrapper functions for executing coloc & associated analyses

cvd1-hf

Analysis code for Olink CVD1 - HF analysis

depression_gi

This code relates to the project titled "Depression and risk of gastrointestinal disorders: a comprehensive two-sample Mendelian randomization study".

dysbiose_project

this repository contains the code (not the data and the results) to reproduce the paper : Impact of the gut microbiota and associated metabolites on cardiometabolic traits, chronic diseases and human longevity: A Mendelian randomization study

faker3

focus

FOCUS: Fine-mapping Of CaUsal gene Sets

fusion_twas

methods for functional summary-based imputation

gagnonmr

gatk4-pathseq

This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.

gcpbayes-pipeline

genomicsem

R-package for structural equation modeling based on GWAS summary data

get_mr

A package for running MR In batches and in parallel quickly

ggcor

The copyright of ggcor belongs to HouyunHuang who closed the account of github. Refer to the Citation for details

health-and-wellbeing-mr

kr

ktplots

Some tools for plotting single-cell data

ktplotspy

Python library for plotting Cellphonedb results. Ported from ktplots R package.

lava

ldsc

LD Score Regression (LDSC)

lhcmr

lhcMR

libra

lone-gensem-mr

Genomic Structural Equation Modelling and Mendelian Randomization of Loneliness and Psychiatric/Substance Use Phenotypes

markergenes

Repository with gene cell-type/tissue specificity matrices.

mebocost

A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data

mendelian-randomization-breast-cancer

Analysis workflow for MRC-IEU PhD mini-project on childhood BMI effect on breast cancer