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Error in testthat about bayesiantools HOT 6 CLOSED

florianhartig avatar florianhartig commented on August 20, 2024
Error in testthat

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Comments (6)

florianhartig avatar florianhartig commented on August 20, 2024

I saw the messages, but no idea. If this fails on your local machine, don't you see a more detailed error message?

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florianhartig avatar florianhartig commented on August 20, 2024

The devel build provides a bit more sensible error messages in the fail log https://travis-ci.org/florianhartig/BayesianTools/jobs/193218696

> test_check("BayesianTools")

1. Error: 2-d with parallel chains works (@test-workflow.R#135) ----------------

error reading from connection

1: createBayesianSetup(ll, lower = c(-10, -10), upper = c(10, 10), parallel = 2) at testthat/test-workflow.R:135

2: createLikelihood(likelihood, parallel = parallel, parallelOptions = parallelOptions, 

       catchDuplicates = catchDuplicates)

3: generateParallelExecuter(likelihood, parallel, parallelOptions)

4: parallel::clusterCall(cl, packageFun, packages, dlls)

5: checkForRemoteErrors(lapply(cl, recvResult))

6: lapply(cl, recvResult)

7: FUN(X[[i]], ...)

8: recvData(con)

9: recvData.SOCKnode(con)

10: unserialize(node$con)

2. Error: 2-d with parallel chains and restart works (@test-workflow.R#162) ----

error reading from connection

1: createBayesianSetup(ll, lower = c(-10, -10), upper = c(10, 10), parallel = 2) at testthat/test-workflow.R:162

2: createLikelihood(likelihood, parallel = parallel, parallelOptions = parallelOptions, 

       catchDuplicates = catchDuplicates)

3: generateParallelExecuter(likelihood, parallel, parallelOptions)

4: parallel::clusterCall(cl, packageFun, packages, dlls)

5: checkForRemoteErrors(lapply(cl, recvResult))

6: lapply(cl, recvResult)

7: FUN(X[[i]], ...)

8: recvData(con)

9: recvData.SOCKnode(con)

10: unserialize(node$con)

testthat results ================================================================

OK: 157 SKIPPED: 0 FAILED: 2

1. Error: 2-d with parallel chains works (@test-workflow.R#135) 

2. Error: 2-d with parallel chains and restart works (@test-workflow.R#162) 

Error: testthat unit tests failed

Execution halted

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stefan-paul avatar stefan-paul commented on August 20, 2024

Ok, I'll try to figure out what's happening.

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florianhartig avatar florianhartig commented on August 20, 2024

This is happening during the creation of the parallel executer in the setup. Seems the problem is

parallel::clusterCall(cl, packageFun, packages, dlls)

Maybe try this in isolation?

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stefan-paul avatar stefan-paul commented on August 20, 2024

Ok. Thanks for the hint!
Update: Found the problem and will fix it tomorrow in the morning!

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stefan-paul avatar stefan-paul commented on August 20, 2024

Done with 30fa993 .

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