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centd

cognoma

Putting machine learning in the hands of cancer biologists

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

covid

SARS-COV2

covid19-review

A collaborative review of the emerging COVID-19 literature. Join the chat here:

cufflinks

curso_python

dataanalysis

The lecture slides for Coursera's Data Analysis class

datasciencecoursera

datascience coursera project

datasharing

The Leek group guide to data sharing

emcee

The Python ensemble sampling toolkit for affine-invariant MCMC

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

finding_targets_pipeline

flalix.github.io

my websit

freebayes

Bayesian haplotype-based polymorphism discovery and genotyping.

futureofstats

Take Homes from the Unconference on the Future of Statistics #futureofstats

gennet

Integrated platform for unifying scientific workflow management and graph databases for transcriptome data analysis.

getting_cleaning_data_project

Getting & Cleaning Data final project

grails-core

The Grails Web Application Framework

hnscc-network

Head-neck-squamous-cell-carcinome co-expression networks of HPV+ samples (graph database).

introducao_bioestatistica_com_python.github.io

Introdução de bioestatística utilizando Python

jhsph753and4

Class github repository for 751 and 2; doctoral classes in the Department of Biostatistics at Johns Hopkins

l1ktools

mongo

labs

Scripts for HarvardX courses: PH525x

macs

MACS -- Model-based Analysis of ChIP-Seq

mia

Mutual Information Analyzer, a software that clusters molecular sequences based on entropy and mutual information

msmbuilder-legacy

Legacy release of MSMBuilder

ng-matrixplot

An angular directive for 2D matrix plots

phast

Mirror of phast installation (as checked out from: svn co http://compgen.bscb.cornell.edu/svnrepo/phast/trunk phast/)

pplacer

Phylogenetic placement and downstream analysis