INSTALL: about firedrake

[liangaomng]

2023-11-15 09:57:54,747 INFO installed.
2023-11-15 09:57:54,747 INFO Checking for presence of package python3-venv...
2023-11-15 09:57:54,747 DEBUG Running command 'dpkg-query -s python3-venv'
2023-11-15 09:57:54,752 DEBUG Package: python3-venv
Status: install ok installed
Priority: optional
Section: python
Installed-Size: 11
Maintainer: Ubuntu Developers [email protected]
Architecture: amd64
Multi-Arch: allowed
Source: python3-defaults
Version: 3.6.7-118.04
Depends: python3.6-venv (>= 3.6.7-1), python3 (= 3.6.7-118.04), python3-distutils (>= 3.6.7-1)
Description: pyvenv-3 binary for python3 (default python3 version)
Python, the high-level, interactive object oriented language,
includes an extensive class library with lots of goodies for
network programming, system administration, sounds and graphics.
.
This package is a dependency package, which depends on Debian's default
Python 3 version (currently v3.6).
Homepage: https://www.python.org/
Original-Maintainer: Matthias Klose [email protected]

2023-11-15 09:57:54,752 INFO installed.
2023-11-15 09:57:54,752 INFO Checking for presence of package zlib1g-dev...
2023-11-15 09:57:54,752 DEBUG Running command 'dpkg-query -s zlib1g-dev'
2023-11-15 09:57:54,757 DEBUG Package: zlib1g-dev
Status: install ok installed
Priority: optional
Section: libdevel
Installed-Size: 448
Maintainer: Ubuntu Developers [email protected]
Architecture: amd64
Multi-Arch: same
Source: zlib
Version: 1:1.2.11.dfsg-0ubuntu2.2
Provides: libz-dev
Depends: zlib1g (= 1:1.2.11.dfsg-0ubuntu2.2), libc6-dev | libc-dev
Conflicts: zlib1-dev
Description: compression library - development
zlib is a library implementing the deflate compression method found
in gzip and PKZIP. This package includes the development support
files.
Homepage: http://zlib.net/
Original-Maintainer: Mark Brown [email protected]

2023-11-15 09:57:54,757 INFO installed.
2023-11-15 09:57:54,757 INFO Checking for presence of package libboost-dev...
2023-11-15 09:57:54,757 DEBUG Running command 'dpkg-query -s libboost-dev'
2023-11-15 09:57:54,762 DEBUG Package: libboost-dev
Status: install ok installed
Priority: optional
Section: libdevel
Installed-Size: 10
Maintainer: Ubuntu Developers [email protected]
Architecture: amd64
Multi-Arch: same
Source: boost-defaults
Version: 1.65.1.0ubuntu1
Depends: libboost1.65-dev
Suggests: libboost-doc
Description: Boost C++ Libraries development files (default version)
The Boost web site provides free, peer-reviewed, portable C++ source
libraries. The emphasis is on libraries which work well with the C++
Standard Library. One goal is to establish "existing practice" and
provide reference implementations so that the Boost libraries are
suitable for eventual standardization. Some of the libraries have
already been proposed for inclusion in the C++ Standards Committee's
upcoming C++ Standard Library Technical Report.
.
This package provides headers for all Boost libraries.
.
Extended precision arithmetic package libmpfrc++-dev or libntl-dev is
required to use the Boost.Multiprecision wrapping of the respective
library.
.
This package is a dependency package, which depends on Debian's default
Boost version (currently 1.65).
Homepage: http://www.boost.org/
Original-Maintainer: Debian Boost Team [email protected]

2023-11-15 09:57:54,762 INFO installed.
2023-11-15 09:57:54,762 INFO Checking for presence of package libopenblas-dev...
2023-11-15 09:57:54,762 DEBUG Running command 'dpkg-query -s libopenblas-dev'
2023-11-15 09:57:54,767 DEBUG Package: libopenblas-dev
Status: install ok installed
Priority: optional
Section: libdevel
Installed-Size: 52155
Maintainer: Ubuntu Developers [email protected]
Architecture: amd64
Multi-Arch: same
Source: openblas
Version: 0.2.20+ds-4
Provides: libblas.so, liblapack.so
Depends: libopenblas-base (= 0.2.20+ds-4)
Breaks: libatlas-base-dev (<< 3.10.3-4~), libblas-dev (<< 3.7.1-2~), liblapack-dev (<< 3.7.1-2~)
Description: Optimized BLAS (linear algebra) library (development files)
OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
.
Unlike Atlas, OpenBLAS provides a multiple architecture library.
.
All kernel will be included in the library and dynamically switched to
the best architecture at run time (only on x86 arches).
.
This package includes the static libraries and symbolic links
needed for program development.
Original-Maintainer: Debian Science Team [email protected]
Built-Using: lapack (= 3.7.1-3ubuntu2)
Homepage: https://github.com/xianyi/OpenBLAS

2023-11-15 09:57:54,767 INFO installed.
2023-11-15 09:57:54,767 INFO Creating firedrake venv in '/liangaoming/hydrogym/third_party/firedrake/scripts/path/to/venv'.
2023-11-15 09:57:55,528 DEBUG Running command '/liangaoming/hydrogym/third_party/firedrake/scripts/path/to/venv/bin/python -m pip install -U setuptools==59.2.0'
2023-11-15 09:57:56,043 DEBUG Exception:
Traceback (most recent call last):
File "/liangaoming/hydrogym/third_party/firedrake/scripts/path/to/venv/lib/python3.6/site-packages/pip/basecommand.py", line 215, in main
status = self.run(options, args)
File "/liangaoming/hydrogym/third_party/firedrake/scripts/path/to/venv/lib/python3.6/site-packages/pip/commands/install.py", line 290, in run
with self._build_session(options) as session:
File "/liangaoming/hydrogym/third_party/firedrake/scripts/path/to/venv/lib/python3.6/site-packages/pip/basecommand.py", line 69, in _build_session
if options.cache_dir else None
File "/usr/lib/python3.6/posixpath.py", line 80, in join
a = os.fspath(a)
TypeError: expected str, bytes or os.PathLike object, not int

2023-11-15 09:57:56,044 INFO

Install log saved in /liangaoming/hydrogym/third_party/firedrake/scripts/firedrake-install.log

[liangaomng]

update：
Eigen tarball hash valid
Depending on your platform, PETSc may take an hour or more to build!
Installing pip dependencies for loopy
Installing pip dependencies for petsc4py
No dependencies found. Skipping.
Installing pip dependencies for ufl
No dependencies found. Skipping.
Installing pip dependencies for fiat
No dependencies found. Skipping.
Installing pip dependencies for FInAT
Traceback (most recent call last):
File "/liangaoming/hydrogym/third_party/firedrake/scripts/firedrake-install", line 1864, in
pip_requirements(p, compiler_env)
File "/liangaoming/hydrogym/third_party/firedrake/scripts/firedrake-install", line 991, in pip_requirements
run_pip_install_wrap(reqs, parallel_compiler_env)
File "/liangaoming/hydrogym/third_party/firedrake/scripts/firedrake-install", line 984, in run_pip_install_wrap
run_pip_install([req])
File "/liangaoming/hydrogym/third_party/firedrake/scripts/firedrake-install", line 965, in run_pip_install
check_call(pipinstall + pipargs)
File "/liangaoming/hydrogym/third_party/firedrake/scripts/firedrake-install", line 653, in check_call
log.debug(subprocess.check_output(arguments, stderr=subprocess.STDOUT, env=os.environ).decode())
File "/root/liangaoming/miniconda3/envs/myenv/lib/python3.10/subprocess.py", line 421, in check_output
return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
File "/root/liangaoming/miniconda3/envs/myenv/lib/python3.10/subprocess.py", line 526, in run
raise CalledProcessError(retcode, process.args,
subprocess.CalledProcessError: Command '['/liangaoming/hydrogym/third_party/firedrake/scripts/venv/bin/python', '-m', 'pip', 'install', '--no-build-isolation', '--no-binary', 'mpi4py,randomgen,islpy,numpy', '-vvv', 'numpy>=1.16']' returned non-zero exit status 2.

[JDBetteridge]

It's very hard to read your error message, please use triple backticks to format multiline code blocks.

I notice two things immediately:

• You are using Python 3.6 which is not supported, see https://www.firedrakeproject.org/download.html#system-requirements .
• The fact that this doesn't throw an error and that eigen is being downloaded suggests that your install script is long out of date.

Please delete firedrake-install and follow the instructions here: https://www.firedrakeproject.org/download.html#obtaining-firedrake

[JDBetteridge]

I'm going to close this issue as there has been no response, feel free to open a new issue if you are still having problems.