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FHCRC Computational Biology's Projects

biopy icon biopy

Automatically exported from code.google.com/p/biopy

deenurp icon deenurp

16S rRNA gene sequence curation and phylogenetic reference set creation

mcl icon mcl

Graph clustering by flow simulation

microbiome-demo icon microbiome-demo

Demonstration files and scripts for our high-throughput sequencing analysis pipeline

mutgen icon mutgen

Generate mutations under a motif based mutation model

nestly icon nestly

Make and use nested directory trees corresponding to combinatorial choices of parameters

prepdrm icon prepdrm

Analysis pipeline for identifying low frequency drug resistance mutations (DRMs) in samples from the Partners PrEP study

sekhon_fisher icon sekhon_fisher

Python implementation of Sekhon's Bayesian alternative to Fisher's exact test

seqmagick icon seqmagick

An imagemagick-like frontend to Biopython SeqIO

taxtastic icon taxtastic

Create and maintain phylogenetic "reference packages" of biological sequences.

yapp icon yapp

Yet another pplacer pipeline

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