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brain-tumor-segmentation-and-survival-prediction-using-deep-neural-networks

Use of state of the art Convolutional neural network architectures including 3D UNet, 3D VNet and 2D UNets for Brain Tumor Segmentation and using segmented image features for Survival Prediction of patients through deep neural networks.

brain-tumor-segmentation-using-deep-neural-networks

The project presents a comparative study of Brain Tumor Segmentation using 3 approaches - 1) Sobel Operator and U-Net, 2) V-Net, 3) W-Net

glioma-classification

The purpose of this project is to be able to automatically and efficiently segment and classify high-grade and low-grade gliomas.

machine-learning-hyperparameter-optimization

medical-images-visualization-with-streamlit

models

Models and examples built with TensorFlow

napari

napari: a fast, interactive, multi-dimensional image viewer for python

pyadiomics-based-glioma-grading

This is a complete guide on how to do Pyradiomics based feature extraction and then, build a model to calculate the grade of glioma.

pyradiomics

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

python-assignments

retinet

A CNN to classify Diabetic Retinopathy with Fundus images

rtdoseprediction

Automatic Radiotherapy Treatment Planning ， Knowledge-Based Planning ， Dose Prediction ， Cascade 3D Network (C3D) ，DCNN, Head and Neck , 1st Place Solution to the AAPM OpenKBP challenge

streamlit

ua-mt

code for MICCAI 2019 paper 'Uncertainty-aware Self-ensembling Model for Semi-supervised 3D Left Atrium Segmentation'.

vision

Datasets, Transforms and Models specific to Computer Vision