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academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

adapterremoval

AdapterRemoval v2 - rapid adapter trimming, identification, and read merging

adegenet

adegenet: a R package for the multivariate analysis of genetic markers

agusmakmun.github.io

:raised_hands: Free and open-source Jekyll theme

alfred

BAM Statistics, Feature Counting and Annotation

ampumi

Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)

analysis_pipeline

TOPMed analysis pipeline

angsd

Program for analysing NGS data.

annotables

R data package for annotating/converting Gene IDs

aqua-hichip

Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.

atac-seq-pipeline

ENCODE ATAC-seq pipeline

atacseq

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

awesome-cheatsheets

超级速查表 - 编程语言、框架和开发工具的速查表，单个文件包含一切你需要知道的东西 :zap:

awesome-crispr

List of software/websites/databases/other stuff for genome engineering

awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

awk

:book: The AWK Programming Language (AWK 程序设计语言, awkbook) 中文翻译, LaTeX 排版

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bedops

:microscope: BEDOPS: high-performance genomic feature operations

bioawk

BWK awk modified for biological data

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

bootstrap-material-design

Material design theme for Bootstrap 3

broman

R/broman: A package with Karl Broman's personal R code

cheatsheets

My cheatsheets

cheatsheets-1

RStudio Cheat Sheets

chia-pet2

a versatile and flexible pipeline for analysing different variants of ChIA-PET data

chilin

ChIP-seq DC and QC Pipeline

chip-seq-pipeline2

chipseq_pipeline

AQUAS TF and histone ChIP-seq pipeline

cistopic

cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

clean-and-simple-jekyll-theme

A simple, clean, and easy to modify Jekyll theme.