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basic-browser

basic_docker

Basic browser install and usage

calculatorhicrep

calculator HiC or ChIAPET replication

chair-pipe

Program for ChAIR data analysis

chair-viewer

Visualization for single-cell multi-omic data

chirpseq-analysis

converts chirpseq fastq files into bedgraphs suitable for downstream processing

chrdpetpipeline

Process ChRD-PET data

chrdpetpipelinev2

Processing chromatin associated RNA-DNA interactions followed by paired-end-tag sequencing (ChRD-PET) data

crane-nature-2015

code associated with crane-nature-2015, 10.1038/nature14450

euler

the python/C code to solve the project Euler problem

external-sort

Python implementation of external sort for sorting large text files

externalsort

An implementation of External Sort in Python

externalsorting

External merge sorting for text files

hic_tools

A collection of tools for Hi-C data analysis

leetcode

the python/JAVA code to solve the leetcode problem

little_tools

little tools in bioinformatics

mia-sig

Multiplex chromatin interaction analysis by signal processing and statistical algorithms

multi-chia-tools

a python program handles multi-chia/multi-drop data

new_basic_browser

new basic browser manual

pyecharts-gallery

Just use pyecharts to imitate Echarts official example. (Official example URL: https://echarts.baidu.com/examples/)

ric2structure

RIC2Structure

rmrb

This is an archive version of old RepBase library (v20170127) for RepeatMasker.

single_line_command

snare_prep

dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline

snornahybridsearchpipeline

A pipeline to discover snoRNA-target chimeric reads in CLIP/HTS experiments.

sprite-pipeline

A self-contained repository of all code needed for SPRITE analysis

targetfinder

Plant small RNA target prediction tool

teachingbioinformatics

作为助教一些要做的事情