Pipeline running but barely any output about mtd

[FEI38750]

The error should happen in an earlier stage of running because the DEG step of the microbiome hasn't finished. Could you list the files in the temp folder? My email address is [email protected]
Could you also try the command "conda activate py2" to see if your py2 environment works?
Some HPC systems record the messages generated from the job into a log file for the user to check later. If not, the users need to save the terminal output during running to a file by themself. For example: add "> log.txt" following the command. Such as: bash ~/MTD/MTD.sh -i ~/raw_data/samplesheet.csv -o ~/MTD_output -h 9544 -t 20 > log.txt

[FEI38750]

Please try a test run to check if the pipeline has been installed successfully. For example: bash [path/to/MTD]/MTD.sh -i [path/to/MTD]/test/test1/samplesheet.csv -o [path/to/MTD]/test/test1/output -h 9606 -t [threads]