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farrellja avatar farrellja commented on August 23, 2024

@Tongtong-Wang
Hey -- I've never seen this issue before. I have not tried to install URD on R 3.6.x yet. Two things stand out to me:

  1. Skipping 1 packages not available: destiny -- URD cannot/will not install if a functional installation of destiny is not present. Double check that it is properly installed; if not, that's the first thing to try to take care of.
  2. Error : (converted from warning) unable to re-encode 'NMFDoublets.R' line 297 -- I wonder if there is a corrupt download of the files? Try deleting the temp files (they seem to be located here: C:\Users\a1189099\AppData\Local\Temp\Rtmp2Jj8SP\remotes1054cc563d6\farrellja-URD-cb6d83f) and try re-installing.
  3. If that continues to be a problem, let me know -- there is a non-ASCII character in that line of code (a plot is labeled with "Δ Overlap:") and maybe depending on the configuration of your operating system this can pose a problem? If 1 & 2 don't fix it, let me know, and I'll try changing this line of code.

from urd.

Tongtong-Wang avatar Tongtong-Wang commented on August 23, 2024

Hi, Farrellja

I’ve figured out eventually, it turns out my Rcpp package was corrupted during my last attempt to updating R from 3.5.x to 3.6.x after reinstalling Rcpp by loading the tarball in, URD is then also installable. Although I have to use the tarball to do that. For some reasons, those few packages do not install from either bioconductor nor GitHub. Thanks for your speedy reply!

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