Comments (2)
@Tongtong-Wang
Hey -- I've never seen this issue before. I have not tried to install URD on R 3.6.x yet. Two things stand out to me:
Skipping 1 packages not available: destiny
-- URD cannot/will not install if a functional installation of destiny is not present. Double check that it is properly installed; if not, that's the first thing to try to take care of.Error : (converted from warning) unable to re-encode 'NMFDoublets.R' line 297
-- I wonder if there is a corrupt download of the files? Try deleting the temp files (they seem to be located here: C:\Users\a1189099\AppData\Local\Temp\Rtmp2Jj8SP\remotes1054cc563d6\farrellja-URD-cb6d83f) and try re-installing.- If that continues to be a problem, let me know -- there is a non-ASCII character in that line of code (a plot is labeled with "Δ Overlap:") and maybe depending on the configuration of your operating system this can pose a problem? If 1 & 2 don't fix it, let me know, and I'll try changing this line of code.
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Hi, Farrellja
I’ve figured out eventually, it turns out my Rcpp package was corrupted during my last attempt to updating R from 3.5.x to 3.6.x after reinstalling Rcpp by loading the tarball in, URD is then also installable. Although I have to use the tarball to do that. For some reasons, those few packages do not install from either bioconductor nor GitHub. Thanks for your speedy reply!
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Related Issues (20)
- Force directed layout fails to show even though it is loaded and calculated HOT 1
- seuratToURD2 (previous issue #29) HOT 3
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- error when installing destiny HOT 1
- Cholmod error HOT 1
- Supplementary Analysis Count and Meta data files out of date on Broad SC Portal
- n_pcs is needed to be specified in calcDM
- floodPseudotime HOT 1
- Markers for Trajectory Branches.
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- Installation: big trouble in many packages
- SupplementaryAnalysis.pdf --- Page 19 --- Batch correct data --- mnnCorrect
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