Comments (1)
Hi @ksr2018,
I have updated the pseudotimeWeightTransitionMatrix
function, which was having an error above 46k cells. To avoid it, it divides the data into pieces, processes them separately, and then reassembles it. Try installing from the debug branch (devtools::install_github(repo="farrellja/URD@debug")
, should be version 1.0.3.9002) and try again. You probably will also want to remove the as.matrix()
in the above call to keep the output as a sparseMatrix.
from urd.
Related Issues (20)
- Link to processed URD object is out of date
- gene cascade heatmap
- macOS: Can't install because of package 'destiny' HOT 1
- error when installing destiny HOT 1
- Cholmod error HOT 1
- Supplementary Analysis Count and Meta data files out of date on Broad SC Portal
- n_pcs is needed to be specified in calcDM
- floodPseudotime HOT 1
- Markers for Trajectory Branches.
- Error in calcTsne and calcDM: length of 'dimnames' [1] not equal to array extent HOT 2
- aucprTestByFactor
- determine.timing: Error in peak.rle[peak, "start"]:peak.rle[peak, "end"] : NA/NaN argument
- where is walks.to.do object
- Error in visit.data[cells.in.tip, ] : incorrect number of dimensions
- Error in floodPseudotimeProcess HOT 2
- Installation: big trouble in many packages
- SupplementaryAnalysis.pdf --- Page 19 --- Batch correct data --- mnnCorrect
- what is tip.walk.files?
- Set two roots?
- limit.single.sigmoid.slopes HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from urd.