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adc_generation

afni

Official AFNI source and documentation

anatomical-imbalance-mapping

code related to publication "Morphological integration of the human brain across adolescence and adulthood", PNAS, 2021

ants

Advanced Normalization Tools (ANTs)

asd_gp_gcn

ASD diagnosis on ABIDE I

autolfads

Generalized modeling of single-trial neural population dynamics.

autolfads-tf2

A TensorFlow 2.0 implementation of Latent Factor Analysis via Dynamical Systems (LFADS) and AutoLFADS.

bctpy

brain connectivity toolbox for python

bngnn

brain-decoding-datasets

Python API for datasets published from Kamitani Lab, Kyoto Univ and ATR.

brainconn

Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D

brainhack_connectomics

brainstat

A statistics and context decoding toolbox for neuroimaging.

build_average_model

Collection of scripts to create population-specific average anatomical models

computer-science

:mortar_board: Path to a free self-taught education in Computer Science!

connectivity_analysis

The scripts and templates in this respository were used in "Prenatal stress exposure and multimodal assessment of amygdala–medial prefrontal cortex connectivity in infants"

cornell-cs5785-2020-applied-ml

Teaching materials for the applied machine learning course at Cornell Tech (online edition)

cs-video-courses

List of Computer Science courses with video lectures.

dipy

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

distortioncompensation

Code for assessing methods for geometric distortion compensation in 7T gradient echo fMRI data

faraix

Config files for my GitHub profile.

fod-net

FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution

from-0-to-research-scientist-resources-guide

Detailed and tailored guide for undergraduate students or anybody want to dig deep into the field of AI with solid foundation.

ggsegdkt

Desikan-Killiany-Tourville cortical atlas for ggseg and ggseg3d

hmm-mar

Toolbox for segmentation and characterisation of transient connectivity

imbizo2022_ds_tutorial

intro_to_comp_neuro

Course content for Introduction to Computational Neuroscience Course

jax-lfads

Understanding computation in artificial and biological recurrent networks through the lens of dynamical systems.

khbm-winterschool-2022

[KHBM] Winter School 2022 - Neuroimage Data Analysis using Python and Graph Neural Networks

latexify_py

Generates LaTeX math description from Python functions.